• Diamond Home page
  • About
  • For Users
  • Public
  • Industry
  • Instruments
  • Careers
  • More Show more menu items
Search

About

  • About Diamond
  • About Synchrotrons
  • News and Features
  • Events
  • Contact Us
  • FAQ

For Users

  • Apply for beamtime
  • User guide
  • Diamond Users Commitee
  • FAQ
  • User Administration System
  • iSpyB

Industry

  • Techniques Available
  • Industry Research
  • Industry Case Studies
  • News
  • Meet the Industry Team

Science

  • Research
  • Computing
  • The Machine
  • Publications
  • Research Expertise
  • Membrane Protein Laboratory
  • Additional Facilities
  • Publications Database

Instruments

  • Biological Cryo-Imaging
  • Crystallography
  • Imaging and Microscopy
  • Macromolecular Crystallography
  • Magnetic Materials
  • Soft Condensed Matter
  • Spectroscopy
  • Structures and Surfaces

Diamond-II

  • Science
  • Machine
  • Beamlines
  • Software, Control and Computing
  • Infrastructure

Public

  • Public open days
  • School visits
  • Partner with Diamond
  • Explore Diamond

Procurement

  • Non-OJEU Tender Notices
  • OJEU PINs
  • OJEU Tender Notices
  • Registration Form

Careers

  • Vacancies
  • Info for applicants
  • Company Benefits
  • Apprenticeships
  • PhD Studentships
  • Work Placement

Main Content

Macromolecular Crystallography
Sub-navigation
  • MX
  • I03
  • I04
  • I04-1
  • I23
  • I24
  • VMXi
  • VMXm
  • HeXI
  • XFEL-HUB
  • XChem
  • MPL
  • Crystallisation Facility
  • MX Data Analysis
  • Staff Research
  • Contacts

In This Section

Sub Navigation
  • I04 Manual
    • Understanding the I04 Beam
      • Variable Beamsize
      • Dose-aware data collection
    • Redhat Linux user environment
    • Introduction to Eiger2 X Detectors for MX at Diamond
    • Preparing for Beamtime
    • Unattended Data Collections
    • ISPyB/Synchweb
    • Shipping Samples
    • Sample Holders
    • Remote Access
    • Data Collection Software
    • Multi-axis goniometer (SmarGon)
    • Data Analysis
    • Data Backup
    • Acknowledging MX beamlines
    • Webcams
    • MX Training
  • Beamline Schematic
  • Staff
  • Latest I04 Solved Structures
  • Publications
  • I04 Photo Gallery
  • FAQ
  • MX Responsive Beamtime
  • Science Highlights and News
  • Accessibility Information

Instruments by Science Group

Macromolecular
Crystallography
Soft Condensed
Matter
Imaging and
Microscopy
Biological
Cryo-Imaging
Magnetic
Materials
Structures and
Surfaces
Crystallography
Spectroscopy

I04 Contact

Beamline Phone Number:
+44 (0) 1235 778679
 

Principal Beamline Scientist:
Ralf Flaig
 
Tel: +44 (0) 1235 778412 
E-mail: [email protected]

More

Science Group Leader

Dave Hall

Email: [email protected]
Tel: +44 (0) 1235 778926

I04 Microfocus MX

Status: Operational

Beamsize: 10 µm x 5 µm - 110 µm x 100 µm
Detector: Eiger2 XE 16M
Wavelength: 0.69 - 2.07 Å

Microfocus Multi-axis Goniometry Humidity Control Macromolecular Crystallography MAD: Multi Wavelength Anomalous Diffraction Remote Access X-ray Diffraction
  1. Instruments
  2. MX
  3. I04
  4. I04 Manual
  5. Understanding the I04 Beam
  6. Dose-aware data collection

Dose

Understanding Radiation Damage and Dose Limits at I04

Figure 1: Relationship between Dose & Diffraction Resolution
Figure 1: Relationship between Dose & Diffraction Resolution

With advancements in technologies, such as brighter synchrotron sources and more sensitive detectors, the limitation in data collection has shifted from the capabilities of the instruments to the radiation damage of the sample. Radiation damage, caused by the absorption of X-ray photons by the crystal, is a major concern in macromolecular crystallography. The absorbed energy can lead to various deleterious effects, and such effects can manifest themselves in the diffraction data as reduced resolution, decreased intensity, and increased noise.

The amount of absorbed dose depends on several factors, including the composition and size of the crystal, as well as the properties of the incident X-ray beam, such as energy, flux, size, and shape.

The graph (Figure 1) provides a guide on the maximum dose to use for data collection as a function of the maximum diffraction resolution of the crystal. The maximum dose is lower for higher-resolution crystals and higher for lower-resolution crystals, as higher-resolution crystals are more susceptible to radiation damage. For native experiments (blue line), two sweeps of 360 degrees at different crystal orientations are recommended, with a maximum dose of 15 MGy per sweep. For ligands, a single 360-degree sweep with a maximum dose of 30 MGy is recommended. For anomalous diffraction experiments (orange line), three sweeps are recommended, with a maximum dose of 3.33 MGy per sweep. It is important to note that this graph provides a guide only, and the values do not need to be followed exactly. The actual dose used may vary depending on the specific experiment and the properties of the crystal.

Dose Awareness at I04

The Physical Basis for Dose-Aware Data Collection

Figure 3. Flux as a Function of Energy at Beamline i04
Figure 3. Flux as a Function of Energy at Beamline i04

The "set target dose" mode is particularly useful when changing beam size or energy, as it ensures that the beamline operates at a fixed dose, regardless of the changes in beam parameters. This is important because the flux profile across the energy range is not linear or constant (Figure 3).

Figure 3 shows the variation of the flux (number of photons per second) as a function of energy (eV) at Diamond Light Source beamline I04. The data were collected for a fixed beam size of 20 microns vertical and normalised to a 300 mA synchrotron ring current. The dots represent the real measured flux, while the smooth line is to illustrate the difficulty of fitting the data with a simple algorithm. The non-linear and non-constant nature of the flux profile is evident, highlighting the importance of using dose-aware data collection strategies.

Maintaining Experimental Consistency Amidst Ring Current Fluctuations.

Figure 4. Variation of Diamond Light Source Ring Current
Figure 4. Variation of Diamond Light Source Ring Current

Even for a particular energy, the flux can vary on different days due to variations in beamline commissioning and machine ring current (Figure 4). Working at a fixed dose and using the live flux at the time of the experiment allows for more rigorous comparisons between experiments on the same sample conducted months apart. This ensures that the diffraction power of the crystals remains consistent, which is not the case when working at fixed exposure.

The figure 4 shows the variation in the Diamond Light Source ring current over time. The left panels illustrate examples from December (2023), April, July, and September 2024, where the ring current varied significantly between and within synchrotron runs, often unnoticed by users. The right panel shows an example of a "decay mode" event, where the ring current steadily decreased over an 11-hour period due to the lack of electron re-injection. In such situations, the "Set Target Dose" mode is crucial for maintaining the consistency of experiments, as the exposure time will be automatically adjusted to compensate for the drop in flux.

  • Contact Us
  • About Diamond Light Source
  • Procurement
  • Supply Chain Transparency
  • Cookie Policy
  • Website Terms of Use
  • Privacy Notice

Diamond Light Source

Diamond Light Source is the UK's national synchrotron science facility, located at the Harwell Science and Innovation Campus in Oxfordshire.

Follow us on Facebook Follow us on Linkedin Follow us on Instagram Follow us on Bluesky

Diamond Light Source Ltd
Diamond House
Harwell Science & Innovation Campus
Didcot
Oxfordshire
OX11 0DE

See on Google Maps

Copyright © Diamond Light Source. Diamond Light Source® and the Diamond logo are registered trademarks of Diamond Light Source Ltd

Registered in England and Wales at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom. Company number: 4375679. VAT number: 287 461 957. Economic Operators Registration and Identification (EORI) number: GB287461957003.

feedback