Manuals and documentation

We organise a training week for users new to the pipeline, usually at the start of the Allocation period (AP). We will contact you directly for this.

The training material below is the best entry into the pipeline, and explains in details all the steps for data processing after an experiment.

Program of the week can be found here.

Handouts:

• Introduction to XChem
• XChem Directory Structure
• TexRank and SoakDB
• Data analysis (XCE-PanDDA)
• Useful Linux Commands
• Experiment Checklist
• User Workflow

Disclaimer: please note that we try our best to keep the documentation as up-to-date as possible but it can take some time!

• Imaging your plates in the research complex
• JOVE paper - Lab XChem, step-by-step

Please report to XChem bulletin board and your local contact issues you have encountered.

For running XCE on a home system - see XCE/PanDDA remotely

For issues visualising models in COOT after pandda.export or refinement see here

A recording of our recent webinar covering updates to the platform can be found here.