Manuals and documentation

We organise a training week for users new to the pipeline, usually at the start of the Allocation period (AP). We will contact you directly for this.

However, the training material is available to everyone so please feel free to have a look and get familiar with the pipeline.

Program of the week can be found here.

Handouts (please note that since those files are pretty big, we won't be given printed handouts):

• Introduction to XChem
• XChem Directory Structure
• TexRank and SoakDB
• Data analysis (XCE-PanDDA)
• Useful Linux Commands
• Experiment Checklist
• User Workflow

Disclaimer: please note that we try our best to keep the documentation as up-to-date as possible but it can take some time!

• Imaging your plates in the research complex
• Lab XChem, step-by-step

Please report to XChem bulletin board and your local contact issues you have encountered.

Tobias Krojer wrote some manuals 

• XCE manual
• XCE/PanDDA remotely

Frequently Asked Questions on XChem Explorer:

1. I cannot see my model in COOT after pandda.export or refinement!! here

A recording of our recent webinar covering updates to the platform can be found here.