• Diamond Home page
  • About
  • For Users
  • Public
  • Industry
  • Instruments
  • Careers
  • More Show more menu items
Search

About

  • About Diamond
  • About Synchrotrons
  • News and Features
  • Events
  • Contact Us
  • FAQ

For Users

  • Apply for beamtime
  • User guide
  • Diamond Users Commitee
  • FAQ
  • User Administration System
  • iSpyB

Industry

  • Techniques Available
  • Industry Research
  • Industry Case Studies
  • News
  • Meet the Industry Team

Science

  • Research
  • Computing
  • The Machine
  • Publications
  • Research Expertise
  • Membrane Protein Laboratory
  • Additional Facilities
  • Publications Database

Instruments

  • Biological Cryo-Imaging
  • Crystallography
  • Imaging and Microscopy
  • Macromolecular Crystallography
  • Magnetic Materials
  • Soft Condensed Matter
  • Spectroscopy
  • Structures and Surfaces

Diamond-II

  • Science
  • Machine
  • Beamlines
  • Software, Control and Computing
  • Infrastructure

Public

  • Public open days
  • School visits
  • Partner with Diamond
  • Explore Diamond

Procurement

  • Non-OJEU Tender Notices
  • OJEU PINs
  • OJEU Tender Notices
  • Registration Form

Careers

  • Vacancies
  • Info for applicants
  • Company Benefits
  • Apprenticeships
  • PhD Studentships
  • Work Placement

Main Content

Macromolecular Crystallography
Sub-navigation
  • MX
  • I03
  • I04
  • I04-1
  • I23
  • I24
  • VMXi
  • VMXm
  • HeXI
  • XFEL-HUB
  • XChem
  • MPL
  • Crystallisation Facility
  • MX Data Analysis
  • Staff Research
  • Contacts

In This Section

Sub Navigation
  • MX Responsive Beamtime Guide
  • Manual
    • Preparing for Beamtime
    • ISPyB/SynchWeb
    • Sample Holders
    • Shipping Samples
    • Remote Access
    • Data Collection Software
      • Navigating in the GUI
      • User Options
      • Baton Panel
      • Message of the Day
      • Load a Sample
      • Manually Mounted Samples
      • Sample Alignment
      • Centering Methods
      • Grid Scan
      • X-ray Centring
      • Fluorescence Data
      • Data Collection
      • Anomalous Data Collection
        • Inverse Beam SAD
        • Wedged MAD
      • Command Queue
      • Line Scan
      • Default File Names
      • Tools
      • Annealing Crystals
      • Washing Crystals
      • The HC1 Perspective
    • Data Analysis
    • Data Backup
    • Webcams
    • Acknowledging MX beamlines
    • Introduction to Eiger2 X Detectors for MX at Diamond
    • Redhat user environment
  • Science Highlights
  • Useful Calculators
  • MX beamtime guide for COVID-19 work
  • MX Training
  • Getting Started at Diamond MX

Instruments by Science Group

Macromolecular
Crystallography
Soft Condensed
Matter
Imaging and
Microscopy
Biological
Cryo-Imaging
Magnetic
Materials
Structures and
Surfaces
Crystallography
Spectroscopy
  1. Instruments
  2. MX
  3. Common
  4. Manual
  5. Data Collection Software
  6. Anomalous Data Collection
  7. Wedged MAD

Wedged MAD

What is a Wedged MAD data collection?

Each circle on the figure below represents 180o sweep on the same crystal at three different energies. For example GDA will first collect sweep 1 (0 to 45o) at Energy 1, then sweep 2 (0 to 45o) at Energy 2, followed by sweep 3 (0 to 45o) at Energy 3 and so on.

Wedged_MAD.png

The advantage using wedged MAD collection compared to regular MAD data collection is that the same reflection at three (or more) different energies will be collected with equivalent dose. It will result in a better assesment of the anomalous signal less polluted by radiation damage.

How to set up a Wedged MAD data collection

In GDA, go to "Data Collection" then click on the tab "Data Collection Table Input"

Note: Click on the images to view full size

Wedged_MAD_gda1-1

 

Enter the Folder where you want to collect your data, Prefix and the specs for the data collection. For example for each energy we will collect 1800 images, 0.1o oscillation, 0.040s exposure and 100% transmission:

Wedged_MAD_gda2

Add experiments until you have one for each energy you want to collect for your MAD data. In this example we will do 3 energies.Wedged_MAD_gda3

 

Change the wavelength or energy in the table to the desired value for each experiment:

Wedged_MAD_gda4-2

Then convert entry into wedged MAD as shown below:

Wedged_MAD_gda5-2

In this example we choose to do wedge of 25o(250 images with 0.1o oscillation). Note that for wedged MAD data collection we recommend to use 5o  wedge or lower.

Wedged_MAD_gda6

The data collection has been broken up into 25o wedges and reorganized so that each wedge is collected at 3 different energies before moving on to the next wedge. The prefix name has also been updated to indicate which energy is collected: E1, E2 or E3. To run it just click on the "Run All" button.

Wedged_MAD_gda7-2

In this case the results will appear as 3 data sets: Lysoszyne_E1, Lysozyme_E2 and Lysozyme_E3.

Note that the wedged MAD experiment is not restricted to 3 energies.

 

  • Contact Us
  • About Diamond Light Source
  • Procurement
  • Supply Chain Transparency
  • Cookie Policy
  • Website Terms of Use
  • Privacy Notice

Diamond Light Source

Diamond Light Source is the UK's national synchrotron science facility, located at the Harwell Science and Innovation Campus in Oxfordshire.

Follow us on Facebook Follow us on Linkedin Follow us on Instagram Follow us on Bluesky

Diamond Light Source Ltd
Diamond House
Harwell Science & Innovation Campus
Didcot
Oxfordshire
OX11 0DE

See on Google Maps

Copyright © Diamond Light Source. Diamond Light Source® and the Diamond logo are registered trademarks of Diamond Light Source Ltd

Registered in England and Wales at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom. Company number: 4375679. VAT number: 287 461 957. Economic Operators Registration and Identification (EORI) number: GB287461957003.

feedback