Temporal refinement of 3D CNN semantic segmentations on 4D time-series of undersampled tomograms using hidden Markov models Dimitrios Bellos, Mark Basham, Tony Pridmore, Andrew P. French
Scientific Reports, 11 Dec 2021 DOI: 10.1038/s41598-021-02466-x Curable layered double hydroxide nanoparticles-based perfusion contrast agents for X-ray computed tomography imaging of vascular structures Yasuaki Tokudome, Gowsihan Poologasundarampillai, Koki Tachibana, Hidenobu Murata, Amy J. Naylor, Akio Yoneyama, Atsushi Nakahira
Advanced Nanobiomed Research, 20 Dec 2021 DOI: 10.1002/anbr.202100123 Scaling the U-net: segmentation of biodegradable bone implants in high-resolution synchrotron radiation microtomograms Ivo M. Baltruschat, Hanna Cwieka, Diana Krüger, Berit Zeller-Plumhoff, Frank Schlünzen, Regine Willumeit-Römer, Julian Moosmann, Philipp Heuser
Scientific Reports, 11 Dec 2021 DOI: 10.1038/s41598-021-03542-y Optimizing the energy bandwidth for transmission full-field X-ray microscopy experiments Malte Storm, Florian Doring, Shashidhara Marathe, Silvia Cipiccia, Christian David, Christoph Rau
Journal Of Synchrotron Radiation, 29 Dec 2021 DOI: 10.1107/S1600577521011206 Evaluating the morphology of the degradation layer of pure magnesium via 3D imaging at resolutions below 40 nm Berit Zeller-Plumhoff, Daniel Laipple, Hanna Slominska, Kamila Iskhakova, Elena Longo, Alexander Hermann, Silja Flenner, Imke Greving, Malte Storm, Regine Willumeit-Römer
Bioactive Materials, 6 Dec 2021 DOI: 10.1016/j.bioactmat.2021.04.009 The bronchial circulation in COVID-19 pneumonia Maximilian Ackermann, Paul Tafforeau, Willi Wagner, Claire Walsh, Christopher Werlein, Mark P. Kuhnel, Florian P. Länger, Catherine Disney, Andrew Bodey, Alexandre Bellier, Stijn E. Verleden, Peter D. Lee, Steven J Mentzer, Danny D. Jonigk
American Journal Of Respiratory And Critical Care Medicine, Nov 2021 DOI: 10.1164/rccm.202103-0594IM Spatial resolution and sensitivity of the eyes of the stingless bee, Tetragonula iridipennis M. Asmi Jezeera, Pierre Tichit, G. S. Balamurali, Emily Baird, Almut Kelber, Hema Somanathan
Journal Of Comparative Physiology A, 48 Nov 2021 DOI: 10.1007/s00359-021-01521-2 Dynamic multicontrast X-ray imaging method applied to additive manufacturing Lorenzo Massimi, Samuel J. Clark, Sebastian Marussi, Adam Doherty, Joachim Schulz, Shashidhara Marathe, Christoph Rau, Marco Endrizzi, Peter D. Lee, Alessandro Olivo
Physical Review Letters, 127 Nov 2021 DOI: 10.1103/PhysRevLett.127.215503 Detection and tracking volumes of interest in 3D printed tissue engineering scaffolds using 4D imaging modalities A. I. Kondarage, B. Gayani, G. Poologasundarampillai, A. Nommeots-Nomm, P. D. Lee, T. D. Lalitharatne, N.d. Nanayakkara, J. R. Jones, A. Karunaratne
Nov 2021 DOI: 10.1109/EMBC46164.2021.9630587 New type of pore-snap-off and displacement correlations in imbibition Kamaljit Singh, Tom Bultreys, Ali Q. Raeini, Mosayeb Shams, Martin J. Blunt
Journal Of Colloid And Interface Science, 40 Nov 2021 DOI: 10.1016/j.jcis.2021.11.109 X‐ray microtomography reveals a lattice‐like network within aortic elastic lamellae Aïcha Ben Zemzem, Aline Genevaux, Amandine Wahart, Andrew J. Bodey, Sébastien Blaise, Béatrice Romier-Crouzet, Jessica Jonquet, Camille Bour, Rémi Cogranne, Pierre Beauseroy, Manuel Dauchez, Michael J. Sherratt, Laurent Debelle, Sébastien Almagro
The Faseb Journal, 35 Oct 2021 DOI: 10.1096/fj.202100323RR Regional variations in discrete collagen fibre mechanics within intact intervertebral disc resolved using synchrotron computed tomography and digital volume correlation C. M. Disney, J. Mo, A. Eckersley, A. J. Bodey, J. A. Hoyland, M. J. Sherratt, A. A. Pitsillides, P. D. Lee, B.k. Bay
Acta Biomaterialia, 6 Oct 2021 DOI: 10.1016/j.actbio.2021.10.012 In‐situ 4D tomography image analysis framework to follow sintering within 3D printed glass scaffolds A. I. Kondarage, G. Poologasundarampillai, A. Nommeots-Nomm, P. D. Lee, T. D. Lalitharatne, N. D. Nanayakkara, J. R. Jones, A. Karunaratne
Journal Of The American Ceramic Society, Oct 2021 DOI: 10.1111/jace.18182 High-speed grating interferometry Shashidhara Marathe, Ralf F. Ziesche, Gunjan Das, Sven L. M. Schroeder, Emily Baird, Christoph Rau
Oct 2021 DOI: 10.1117/12.2598481 Evaporation kinetics in highly porous tetrapodal zinc oxide networks studied using in situ SRµCT Birte Hindenlang, Anna Gapeeva, Martina J. Baum, Sören Kaps, Lena M. Saure, Florian Rasch, Jorg Hammel, Julian Moosmann, Malte Storm, Rainer Adelung, Fabian Schütt, Berit Zeller-Plumhoff
Scientific Reports, 11 Oct 2021 DOI: 10.1038/s41598-021-99624-y Operando and high-throughput micro and nano-tomography Christoph Rau, Shashidhara Marathe, Andrew J. Bodey, Malte Storm, Darren Batey, Silvia Cipiccia, Peng Li, Ralf F. Ziesche, Mohamed Al-Hada, Sven L. M. Schroeder, Gunjan Das, Anjali Goswami
Oct 2021 DOI: 10.1117/12.2598470 Exploiting confinement to study the crystallization pathway of calcium sulfate Clara Anduix-Canto, Mark A. Levenstein, Yi-Yeoun Kim, Jose R. A. Godinho, Alexander N. Kulak, Carlos Gonzalez Nino, Philip J. Withers, Jonathan P. Wright, Nikil Kapur, Hugo K. Christenson, Fiona C. Meldrum
Advanced Functional Materials, Sept 2021 DOI: 10.1002/adfm.202107312 4D microstructural changes in dentinal tubules during acid demineralisation Nathanael Leung, Robert A. Harper, Bin Zhu, Richard M. Shelton, Gabriel Landini, Tan Sui
Dental Materials, 55 Sept 2021 DOI: 10.1016/j.dental.2021.09.002 X-ray computed tomography at synchrotron facilities: Pipelines for data acquisition and reduction Lucia Mancini, Dula Parkinson, Alexander Rack, Christoph Rau, Francesco De Carlo
Synchrotron Radiation News, 34 Sept 2021 DOI: 10.1080/08940886.2021.1968243 Synchrotron x‐ray tomography for rechargeable battery research: Fundamentals, setups and applications Fengcheng Tang, Zhibin Wu, Chao Yang, Markus Osenberg, Andre Hilger, Kang Dong, Henning Markötter, Ingo Manke, Fu Sun, Libao Chen, Guanglei Cui
Small Methods, 34 Aug 2021 DOI: 10.1002/smtd.202100557 Mechanisms of gas and shrinkage porosity formation in solidifying shear bands Shishira Bhagavath, Zhixuan Gong, Tim Wigger, Saurabh Shah, Bita Ghaffari, Mei Li, Shashidhara Marathe, Shyamprasad Karagadde, Peter D. Lee
Journal Of Materials Processing Technology, 26 Aug 2021 DOI: 10.1016/j.jmatprotec.2021.117338 Deep learning approach to assess damage mechanics of bone tissue Sabrina Chin-Yun Shen, Marta Pena Fernandez, Gianluca Tozzi, Markus J. Buehler
Journal Of The Mechanical Behavior Of Biomedical Materials, 4 Aug 2021 DOI: 10.1016/j.jmbbm.2021.104761 Investigating the microstructure of soft, microporous matter with synchrotron X-ray tomography Lorenzo Metilli, Malte Storm, Andrew J. Bodey, Kaz Wanelik, Arwen I. I. Tyler, Aris Lazidis, Stephanie Marty-Terrade, Elena Simone
Materials Characterization, Aug 2021 DOI: 10.1016/j.matchar.2021.111408 Operando synchrotron imaging of electrolyte distribution in silver-based gas diffusion electrodes during oxygen reduction reaction in highly alkaline media Melanie Cornelia Paulisch, Marcus Gebhard, David Franzen, Andre Hilger, Markus Osenberg, Shashidhara Marathe, Christoph Rau, Barbara Ellendorff, Thomas Turek, Christina Roth, Ingo Manke
Acs Applied Energy Materials, Jul 2021 DOI: 10.1021/acsaem.1c01524 3D cyclorama for digital unrolling and visualisation of deformed tubes Charalambos Rossides, Sylvia L. F. Pender, Philipp Schneider
Scientific Reports, 11 Jul 2021 DOI: 10.1038/s41598-021-93184-x Fossilized cell structures identify an ancient origin for the teleost whole-genome duplication Donald Davesne, Matt Friedman, Armin D. Schmitt, Vincent Fernandez, Giorgio Carnevale, Per E. Ahlberg, Sophie Sanchez, Roger B. J. Benson
Proceedings Of The National Academy Of Sciences, 118 Jul 2021 DOI: 10.1073/pnas.2101780118 Denoising and semantic segmentation of 4D datasets with undersampled micro X-ray CTs using deep learning Dimitrios Bellos
Jul 2021 Thesis I12-JEEP: Joint Engineering, Environmental and Processing I13-2-Diamond Manchester Imaging
X-ray phase-contrast imaging using near-field speckles Marie-Christine Zdora
Jul 2021 Thesis I12-JEEP: Joint Engineering, Environmental and Processing I13-2-Diamond Manchester Imaging open access
Correlative soft tissue synchrotron microtomography: Sample preparation, imaging, reconstruction and segmentation methods Andrew Bodey, Merrick Strotton, Win Tun, Alexey V. Buzmakov, Victoria Gulimova, Kazimir Wanelik, Michele Darrow, Elizabeth Bradbury, Christoph Rau
Jul 2021 DOI: 10.22443/rms.mmc2021.177 Understanding the complex 3D structures of metal carbides for optimising the manufacture of Ni superalloys Jiawei Mi, Zhiguo Zhang
Jul 2021 Diamond Annual Review Highlight I13-1-Coherence I13-2-Diamond Manchester Imaging
Tracking the shape of nutshells during biochar production Meredith Rose Barr, Roberto Volpe
Jul 2021 Diamond Annual Review Highlight I13-2-Diamond Manchester Imaging
The importance of particle dispersion in electrical treeing and breakdown in nano-filled epoxy resin Siyuan Chen, Simon Rowland, James Carr, Malte Storm, Kwang-Leong Choy, Adam J. Clancy
International Journal Of Electrical Power & Energy Systems, 129 Jul 2021 DOI: 10.1016/j.ijepes.2021.106838 Enhanced near-infrared absorption for laser powder bed fusion using reduced graphene oxide Chu Lun Alex Leung, Iuliia Elizarova, Mark Isaacs, Shashidhara Marathe, Eduardo Saiz, Peter D. Lee
Applied Materials Today, 23 June 2021 DOI: 10.1016/j.apmt.2021.101009 A massively multi-scale approach to characterizing tissue architecture by synchrotron micro-CT applied to the human placenta W. M. Tun, G. Poologasundarampillai, H. Bischof, G. Nye, O. N. F. King, M. Basham, Y. Tokudome, R. M. Lewis, E. D. Johnstone, P. Brownbill, M. Darrow, I. L. Chernyavsky
Journal Of The Royal Society Interface, 18 June 2021 DOI: 10.1098/rsif.2021.0140 Time-resolved in situ synchrotron-microCT: 4D deformation of bone and bone analogues using digital volume correlation Marta Pena Fernandez, Alexander P. Kao, Roxane Bonithon, David Howells, Andrew J. Bodey, Kazimir Wanelik, Frank Witte, Richard Johnston, Hari Arora, Gianluca Tozzi
Acta Biomaterialia, 20 June 2021 DOI: 10.1016/j.actbio.2021.06.014 Linking multi-scale 3D microstructure to potential enhanced natural gas recovery and subsurface CO2 storage for Bowland shale, UK Lin Ma, Anne-Laure Fauchille, Humera Ansari, Michael Chandler, Paul Ashby, Kevin Taylor, Ronny Pini, Peter D. Lee
Energy & Environmental Science, 1 June 2021 DOI: 10.1039/D0EE03651J Journal Paper I12-JEEP: Joint Engineering, Environmental and Processing I13-2-Diamond Manchester Imaging open access Time-lapse nanometre-scale 3D synchrotron imaging and image-based modelling of the response of shales to heating Ke Wang, Michael Chandler, Jianpeng Wang, Patrick Dowey, Malte Storm, Kevin Taylor, Peter Lee, Lin Ma
International Journal Of Coal Geology, 261 June 2021 DOI: 10.1016/j.coal.2021.103816 A stacked dense denoising–segmentation network for undersampled tomograms and knowledge transfer using synthetic tomograms Dimitrios Bellos, Mark Basham, Tony Pridmore, Andrew P. French
Machine Vision And Applications, 32 May 2021 DOI: 10.1007/s00138-021-01196-4 Asbestos bodies count and morphometry in bulk lung tissue samples by non-invasive X-ray micro-tomography Fabrizio Bardelli, Francesco Brun, Silvana Capella, Donata Bellis, Claudia Cippitelli, Alessia Cedola, Elena Belluso
Scientific Reports, 11 May 2021 DOI: 10.1038/s41598-021-90057-1 Role of the local stress systems on microstructural inhomogeneity during semisolid injection S. Bhagavath, Z. Gong, T. Wigger, S. Shah, B. Ghaffari, M. Li, S. Marathe, P. D. Lee, S. Karagadde
Acta Materialia, 392 May 2021 DOI: 10.1016/j.actamat.2021.117015 3D analysis of enamel demineralisation in human dental caries using high-resolution, large field of view synchrotron X-ray micro-computed tomography Cyril Besnard, Robert A. Harper, Thomas E. J. Moxham, Jonathan D. James, Malte Storm, Enrico Salvati, Gabriel Landini, Richard M. Shelton, Alexander M. Korsunsky
Materials Today Communications, 392 May 2021 DOI: 10.1016/j.mtcomm.2021.102418 Tracking lithium penetration in solid electrolytes in 3D by in-situ synchrotron X-ray computed tomography Shuai Hao, Sohrab R. Daemi, Thomas M. M. Heenan, Wenjia Du, Chun Tan, Malte Storm, Christoph Rau, Dan J. I. Brett, Paul R. Shearing
Nano Energy, 82 Apr 2021 DOI: 10.1016/j.nanoen.2021.105744 4D micro-scale, phase-contrast X-ray imaging and computed tomography of HMX-based polymer-bonded explosives during thermal runaway G. R. Parker, D. S. Eastwood, M. Storm, K. Vitharana, E. M. Heatwole, I. Lopez-Pulliam, R. M. Broilo, P. M. Dickson, A. Martinez, Christoph Rau, N. K. Bourne
Combustion And Flame, 226 Apr 2021 DOI: 10.1016/j.combustflame.2020.12.025 The effect of pore topology on fluid flow in carbonates Michael Lacey
Mar 2021 Thesis I13-2-Diamond Manchester Imaging
Wide-ranging multitool study of structure and porosity of PLGA scaffolds for tissue engineering Alexey V. Buzmakov, Andrey G. Dunaev, Yuriy S. Krivonosov, Denis A. Zolotov, Irina G. Dyachkova, Larisa I. Krotova, Vladimir V. Volkov, Andrew J. Bodey, Victor E. Asadchikov, Vladimir K. Popov
Polymers, 13 Mar 2021 DOI: 10.3390/polym13071021 3D printed silica-gelatin hybrid scaffolds of specific channel sizes promote collagen type II, Sox9 and Aggrecan production from chondrocytes Maria Nelson, Siwei Li, Samuel J. Page, Xiaomeng Shi, Peter D. Lee, Molly M. Stevens, John V. Hanna, Julian R. Jones
Materials Science And Engineering: C, Feb 2021 DOI: 10.1016/j.msec.2021.111964 Increased cochlear otic capsule thickness and intracortical canal porosity in the oim mouse model of osteogenesis imperfecta Annalisa De Paolis, Brendyn James Miller, Michael Doube, Andrew John Bodey, Christoph Rau, Claus-Peter Richter, Luis Cardoso, Alessandra Carriero
Journal Of Structural Biology, Feb 2021 DOI: 10.1016/j.jsb.2021.107708 Steerable3D: An ImageJ plugin for neurovascular enhancement in 3-D segmentation Paolo Miocchi, Alejandra Sierra, Laura Maugeri, Eleonora Stefanutti, Ali Abdollahzadeh, Fabio Mangini, Marta Moraschi, Inna Bukreeva, Lorenzo Massimi, Francesco Brun, Jussi Tohka, Olli Gröhn, Alberto Mittone, Alberto Bravin, Charles Nicaise, Federico Giove, Alessia Cedola, M. Fratini
Physica Medica, 81 Jan 2021 DOI: 10.1016/j.ejmp.2020.12.010 Towards a mechanistic understanding of particle shrinkage during biomass pyrolysis via synchrotron X-ray microtomography and in-situ radiography Meredith Rose Barr, Rhodri Jervis, Yeshui Zhang, Andrew J. Bodey, Christoph Rau, Paul R. Shearing, Dan J. L. Brett, Maria-Magdalena Titirici, Roberto Volpe
Scientific Reports, 11 Jan 2021 DOI: 10.1038/s41598-020-80228-x Muscular loading affects the 3D structure of both the mineralized rudiment and growth plate at early stages of bone formation Maria Pierantoni, Sophie Le Cann, Vivien Sotiriou, Saima Ahmed, Andrew J. Bodey, Iwan Jerjen, Niamh C. Nowlan, Hanna Isaksson
Bone, Jan 2021 DOI: 10.1016/j.bone.2021.115849 Dynamic fluid configurations in steady-state two-phase flow in Bentheimer sandstone Ying Gao, Ali Q. Raeini, Martin J. Blunt, Branko Bijeljic
Physical Review E, 103 Jan 2021 DOI: 10.1103/PhysRevE.103.013110 Correlating local volumetric tissue strains with global lung mechanics measurements Hari Arora, Ria Mitchell, Richard Johnston, Marinos Manolesos, David Howells, Joseph Sherwood, Andrew Bodey, Kaz Wanelik
Materials, 14 Jan 2021 DOI: 10.3390/ma14020439