This workshop is geared towards electron microscopy users who are interested in HyperSpy for their data analysis.
During this one-week workshop we will cover the basics of data handling in HyperSpy and then provide example work-flows for typical datasets that Users acquire at ePSIC. This will include spectroscopy datasets in STEM, i.e. spectrum images with EELS and / or EDXS, and also large 4D-STEM datasets acquired using the Medipix detector on E02. Machine learning toolboxes available within HyperSpy and their application on various data types will also be discussed. We will cover two packages dedicated to 4D-STEM data analysis, PyXEM and py4DSTEM, and a simulation package, abTEM.
We will have ample time for participants to discuss their own specific data analysis questions, with a dedicated “Bring your own data” session towards the end of the workshop.
The following topics will be covered over the duration of the workshop:
Please see below provisional agenda for this event. An updated agenda will be provided closer to the event date.
|
Friday 30th May |
|
|
11:00 |
Optional preparation session (to help with python package installations and testing ahead of the event) |
| Monday 2nd June | |
|
10:30 |
Welcome & setup |
|
10:45 |
What is HyperSpy? |
|
11:15 |
A practical introduction to Python/HyperSpy I |
|
12:15 |
Break |
|
13:00 |
A practical introduction to Python/HyperSpy II |
|
14:30 |
Break |
|
14:45 |
Model fitting introduction |
|
15:15 |
Model fitting |
| 16:15 | Break |
| 16:30 | Data I/O with Rosettasciio |
| Tuesday 3rd June | |
| 10:30 | Machine learning introduction |
| 11:00 | Machine learning |
| 12:00 | Break |
| 13:00 | EELS analysis in HyperSpy |
| 14:30 | Break |
| 14:45 | Introduction to abTEM |
| 16:45 | Q&A |
| Wednesday 4th June | |
| 10:30 | Big data and lazy signals |
| 12:00 | Break |
| 13:00 | Introduction to Py4DSTEM I |
| 14:15 | Break |
| 14:30 | Introduction to Py4DSTEM II |
| 16:45 | Q/A |
| Thursday 5th June | |
| 10:30 | EDX analysis |
| 11:00 | EDX analysis in HyperSpy |
| 12:00 | Break |
| 13:00 | Atomap |
| 13:45 | ParticleSpy |
| 14:30 | Break |
| 14:45 | SED analysis with PyXem |
| 16:45 | Q/A |
|
Friday 6th June |
|
| 10:30 | Example data analysis with Python libraries |
| 11:30 | How to make publication quality plots with matplotlib |
| 12:00 | Break |
| 13:00 | HyperSpy Community / Where to get help!? |
| 13:30 | Research / Application talk / Advanced topic I |
| 14:00 | Break |
| 14:15 | Research / Application talk / Advanced topic II |
| 15:15 | Bring your own data! |
| 16:45 | Q/A & closing remarks |
| 17:00 | Workshop End |
This event is free to attend, but spaces will be limited, so attendance is subject to an application process.
Applications for the HyperSpy Workshop 2025 are now open, and will be closing on Sunday 11th May 2025 at 17:00 (BST).
All applicants will be informed on the result of their application week commencing Monday 12th May May 2025.
Please note that places on this workshop are limited. In the case of oversupscription there will be a limit of attendees for each organisation.
If you have any questions or queries, please contact [email protected]
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