XIA2

There are a couple of options available to reprocess your data using xia2.  The best method will probably depend on which extra commands are likely to be required to get a successful outcome.

ISPyB can be used to submit xia2 reprocessing jobs with some extra options available, and with the output files conveniently accessible for download from the Logs and Files section.

Reprocessing jobs submitted through this route write the output files in a new sub-folder for that sample within the "Processed" directory.

More information on how to use ISPyB for reprocessing can be found in the ISPyB section of this manual.

Reprocessing jobs can also be submitted directly using the command line.

This is a more manual procedure, and a suitable directory structure needs to be created by hand.  Reprocessing carried out this way must also be done within the "processing" directory.

More information on how to set reprocessing jobs running from the command line can be found in the XIA2-Command Line section of this manual.

	ISPyB	Command Line
Cell Information
Select image range
Resolution cut off
Change index method
Use reflection theshold
Check for radiation damage
Alternative absorption correction level
Fix beam centre
Files available to download in ISPyB

Both options write input files for structure solution to the DataFiles directory.