Infrared microspectroscopy analysis training - QUASAR software

Mar 19. till Mar 20.

Infrared microspectroscopy analysis training - QUASAR software

To address the infrared user community's need for a user-friendly and open-source software for data analysis, the B22 MIRIAM beamline at Diamond Light Source in collaboration with the SMIS beamline at SOLEIL are organising a 2-day hands-on workshop to introduce the QUASAR software.

Date
19/03/20202020-03-19 - 20/03/20202020-03-20
Location
Diamond House, Diamond Light Source

Overview

This 2-day hands-on training will take place at Diamond Light Source and is targeted at Infrared users (current, future or potential) working on biomedical applications, material-engineering, physical-chemical sciences, and more.

The purpose of this training is to provide a practical introduction to the QUASAR software, using tutorials and examples on real-life IR microscopy (Raman) and IR imaging datasets.

What is QUASAR?

QUASAR is an open-source software for hyperspectral imaging techniques (based on the Orange machine learning and data visualization suite).

QUASAR allows user-friendly analysis using visual programming. Routine tools like baseline correction, normalization, different versions of EMSC, differentiation and smoothing can be combined with multivariate statistical and machine learning methods, such as principal component analysis or various clustering methods. Savable and shareable workflows ensure consistent analysis across different projects, or the development of different analysis to same large dataset. Visualization tools enable quick inspection of the data and the results of the analyses.

Application

Applications are now open, and will be closing at 5pm on Tuesday 25th February 2020.
 
All applicants will be informed of their application outcome shortly after.
 
Please note that places on this training course are limited. In the case of oversubscription there will be a limit on attendees per organisation. Participants will be selected on a fair distribution basis across the research groups, giving priority to early career scientists.
 
If your application is successful, the workshop will be free to attend. Meals and refreshments will be provided throughout the workshop. Applicants are required to cover the cost of their accommodation and the cost of their transport to and from Diamond.
 

Preliminary Agenda

Thursday 19th March

9am - 10am

Coffee and registrations

10am - 11am

Theory and practice

11am - 11.20am

Coffee break

11.20am - 12.30pm

Theory and practice

12.30pm - 1.30pm

Lunch break

1.30pm - 3pm

Hands-on session

3pm - 3.30pm

Coffee break

3.30pm - 5pm

Theory and practice

5pm - 6pm

Drinks and sponsors

6pm - 8pm

Workshop dinner

Friday 20th March

9am - 10.30am

Theory and practice

10.30am - 11am

Coffee break

11am - 12.30pm

Hands-on session

12.30pm - 1.15pm

Lunch break

1.15pm - 3pm

Practicals
3pm - 4pm Q&A session

 

Topics

  • Workflows in Quasar
  • Basic Data Exploration
  • Preprocessing with EMSC
  • Adding Annotations
  • Spectral Preprocessing
  • PCA on Spectral Data
  • Hyperspectral Images
  • Integrals and Ratios
  • Classification
  • Classification Accuracy
  • Model Inspection
  • Hierarchical Clustering
  • Classification of Spectra
  • New and Different Test Data
  • Clustering Spectral Images
  • PCA with Spectral Images
  • Classification on Hyperspectral Images
  • Cross-Validation

 

Speakers

  • Ferenc Borondics, SOLEIL (France)
  • Christophe Sandt, SOLEIL (France)

Parking on Campus

Due to a large number of building works on site, parking on the Harwell Campus is extremely limited and visitors’ parking cannot be guaranteed. We strongly recommend travelling by public transport, where possible, if you are attending an event at Diamond.

We apologise for any inconvenience caused.

Find here more information on how to get to Diamond by Public Transport.

Contacts

 If you have any question or you need any further information, please contact events@diamond.ac.uk